2026
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Datasets and R scripts linked to the study : "Winter warming and agricultural plant diversification promote ground beetles and spiders with contrasted functional thermal responses" This study is part of the PhD thesis of H. Arezki affiliated with the ECOBIO UMR (CNRS, University of Rennes) with the participation of the LTSER Zone Atelier Armorique for the study here and associated with FLOWER (leader Joan Van Baaren) and PLANTSERV projects (leader Cécile Le Lann) with the financial support of the French Office of Biodiversity (OFB), as part of the call for research projects “Sustainable crop protection without neonicotinoids: improving the emerging levers and opening up more innovative perspectives”, with the fees for diffuse pollution coming from the Ecophyto II+ plan. This study was supported by a grant to Cécile Le Lann from the French Foundation for Biodiversity Research (FRB). (2025-01-12)
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The study of riparian vegetation is based on the observation of natural plant communities spontaneously colonizing newly exposed areas following the erasure of the Vezins and La-Roche-Qui-Boit dams. The vegetation monitoring system includes two complementary approaches: i) a vegetation sampling method based on floristic surveys (composition & structure) carried out within a series of quadrats positioned along a transect ii) a monitoring of the vegetation units (UV) observed within the valley This dataset specifically concerns the overall characterization observed on each quadrat in terms of strata and concerns only the Sélune Observatory (2021-2026). The sampling monitoring system is based on measurements distributed at different points in space (longitudinally and laterally). It aims to identify the diversity of flora and vegetation and describe the structure of emerging formations and plant communities within the neo-valley. Implemented annually (sub-annual only for 2021, before dismantling), this monitoring aims to identify and characterize the evolution trajectories of these vegetation over time. The vegetation sampling protocol is implemented at several stations located along the course of the Sélune and at the mouth of several tributaries located in the right-of-way of the two former reservoirs. The sample of stations is supplemented by a batch of stations positioned outside the right-of-way of the two former reservoirs, downstream and upstream, which constitute so-called "reference" stations. For each station, a transect is established perpendicular to the channel, from the bank to a reference point located at the level of the former water reservoir (i.e. 60m NGF for Vezins & 28.5m NGF for LRQB). Along this transect, 25m2 (5mx5m) quadrats are positioned according to previously set distance intervals. These quadrats (named Q1 to Q1+n) constitute the elementary unit within which abiotic (slope, texture...) and biotic (composition, structure) parameters are characterized and evaluated. The number of quadrats sampled per station varies depending on the width of the exposed bank (or transect length). It is completed by a reference quadrat, located beyond this maximum value (named Q0). The inventory of vascular flora, i.e. herbaceous and woody plant species within the quadrats, aims to be exhaustive and to identify them up to the specific or even sub-specific rank. The overall characterization mentioned mainly concerns, for each quadrat, the type of soil encountered (see attribute dictionary), the slope (see attribute dictionary), the proportions of water cover, bare soil, and litter, as well as, for each of the 6 defined strata (see attribute dictionary): the considered height limits, the maximum and average height, and the proportion of overlap (relative to the 25m2 of the quadrat). This layer gives, for each monitoring quadrat of vegetation sampling from 2021 to 2026, the following information: – Quadrat information (id, code, number and distance from its centroid to the station reference point), – Campaign information (id, code, date, campaign), – Station information (code, name, protocol applied, number of quadrats, code for the associated Sélune reference point and, as a result, positioning on the catchment area, distance to sea, distance to source and watercourse, watercourse reference altitude) – Information on the transect by campaign (number and length, X, Y, LON, LAT coordinates of the reference points “NGF” and end point “bank”) – Information concerning the strata (identified or not), soil typology, water, bare and litter coverings, as well as details for each stratum (name of stratum ‘muscinal’, “herbaceous”, “young plant shrub,” “low shrub', “high shrub” and “arborescent, the height limits of the stratum, the associated overlap, the maximum and average heights of the stratum) – “Point” geometry (default) corresponding to the transect reference point
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The study of riparian vegetation is based on the observation of natural plant communities spontaneously colonizing newly exposed areas following the erasure of the Vezins and La-Roche-Qui-Boit dams. The vegetation monitoring system includes two complementary approaches: i) a vegetation sampling method based on floristic surveys (composition & structure) carried out within a series of quadrats positioned along a transect ii) a monitoring of the vegetation units (UV) observed within the valley This sheet specifically concerns the monitoring of vegetation units (UV) observed within the valley, only for data from the Sélune Observatory (2021-2026). The monitoring system for Vegetation Units is based on the identification of vegetation distributed along the transect at each station in the main stream. It aims to obtain a representative view of diversity and the organization of plant formations and communities. This monitoring consists of identifying the discontinuities in terms of composition and structure of the various vegetation types that develop within the neo-valley along the transect that descends to the bank, and to report their influence. (distance in metres from the reference point at the edge of the old dam). These data can be used to establish a pro rata of the different plant formations encountered along the transect. Although this value is thus really valid only at the transect of each station, this information can potentially constitute an approximation of the heterogeneity and distribution of vegetation at the valley scale. This layer gives, for each riparian vegetation monitoring station and each campaign from 2021 to 2026, the following information: – Campaign information (id, code, date, campaign), – Station information (code, name, protocol applied, number of quadrats, code for the associated Sélune reference point and, as a result: location on the watershed, distance to sea, distance to source and water course) – Information on the transect by campaign (number and length, X, Y, LON coordinates, LAT of reference points "NGF" and end point "rive") – Information regarding the Vegetation Units (VU) identified by campaign (number, description: code, start position, end position, EUNIS3 characteristics, 4) – Origin of the data ("Observatoire Sélune," "Hors Observatoire Sélune," "Projet Séripage," or "Projet Restaure") – “Point” geometry (default) corresponding to the transect reference point – Line (alternative) geometry of the associated transect for each campaign. The study of riparian vegetation in exposed areas is based on the observation of natural plant communities colonizing newly exposed mudflats, at different time scales (intra- and interannual variations) and at nested spatial scales. The botanical inventory is carried out according to the Braun-Blanquet method. The sampling protocol is stratified in order to maximize the recorded diversity. For each study area, a transect perpendicular to the riverbed is established, where strips parallel to the watercourse are marked on the ground according to the exposure rate. This layer indicates the location of these study areas, the layout of transects and information regarding vegetation units recorded between 2021 and 2026.
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Title: Necrosis is a major driver of thermal stress-induced mortality in Drosophila melanogaster larvae: cellular and molecular insights across acclimation phenotypes Authors: Fatemeh Saeidi & Hervé Colinet Affiliation: Université de Rennes, CNRS, ECOBIO (Ecosystèmes, biodiversité, évolution) – UMR 6553, 35000 Rennes, France This repository contains raw data files (in .txt format) associated with the study investigating cell death dynamics induced by cold (-3°C) and heat (38°C) stress in third-instar Drosophila melanogaster larvae. The study compared three acclimation phenotypes: - LNA: Non-acclimated larvae (reared at 25°C for 4 days) - LCA: Cold-acclimated larvae (reared at 15°C for 10 days) - LHA: Heat-acclimated larvae (reared at 30°C for 3 days) All data files are in tab-delimited text format (.txt). For detailed statistical methods, please refer to the Materials & Methods section of the associated manuscript. LNA : Non-acclimated larvae (reared at 25°C for 4 days) LCA : Cold-acclimated larvae (reared at 15°C for 10 days) LHA : Heat-acclimated larvae (reared at 30°C for 3 days) BS : Black spots (melanized lesions) NBS : No black spots Co : Unstressed control CTCF : Corrected total cell fluorescence ROS : Reactive oxygen species GLM : Generalized linear model GLMM : Generalized linear mixed model PCA : Principal component analysis RpL32 : Reference gene used for normalization
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The study of riparian vegetation is based on the observation of natural plant communities that spontaneously colonize areas newly exposed following the removal of the Vezins and La-Roche-Qui-Boit dams. The vegetation monitoring program comprises two complementary approaches: i) a vegetation sampling method based on floristic surveys (composition and structure) conducted within a series of plots positioned along a transect ii) monitoring of Vegetation Units (VUs) observed within the valley i) Sampling monitoring: The sampling monitoring system is based on measurements distributed at different points in space (longitudinally and laterally). It aims to identify the diversity of flora and vegetation and describe the structure of emerging formations and plant communities within the neo-valley. Implemented annually (sub-annual only for 2021, before dismantling), this monitoring aims to identify and characterize the evolution trajectories of these vegetation over time. The vegetation sampling protocol is implemented at several stations located along the course of the Sélune and at the mouth of several tributaries located in the right-of-way of the two former reservoirs. The sample of stations is supplemented by a batch of stations positioned outside the right-of-way of the two former reservoirs, downstream and upstream, which constitute so-called "reference" stations. For each station, a transect is established perpendicular to the channel, from the bank to a reference point located at the level of the former water reservoir (i.e. 60m NGF for Vezins & 28.5m NGF for LRQB). Along this transect, 25m2 (5mx5m) quadrats are positioned according to previously set distance intervals. These quadrats (named Q1 to Q1+n) constitute the elementary unit within which abiotic (slope, texture...) and biotic (composition, structure) parameters are characterized and evaluated. The number of quadrats sampled per station varies depending on the width of the exposed bank (or transect length). It is completed by a reference quadrat, located beyond this maximum value (named Q0). The inventory of vascular flora, i.e. herbaceous and woody plant species (excluding bryophytes) within quadrats aims at exhaustiveness and identification up to specific or even sub-specific rank. ii) Monitoring of Vegetation Units: The monitoring system for Vegetation Units is based on the identification of vegetation distributed along the transect at each station in the main stream. It aims to obtain a representative view of diversity and the organization of plant formations and communities. This monitoring consists of identifying the discontinuities in terms of composition and structure of the various vegetation types that develop within the neo-valley along the transect that descends to the bank, and to report their influence. (distance in metres from the reference point at the edge of the old dam). These data can be used to establish a pro rata of the different plant formations encountered along the transect. Although this value is thus really valid only at the transect of each station, this information can potentially constitute an approximation of the heterogeneity and distribution of vegetation at the valley scale. This layer gives, for each riparian vegetation monitoring station and each campaign from 2021 to 2026, the following information: – Campaign information (id, code, date, campaign), – Station information (code, name, protocol applied, number of quadrats, code for the associated Sélune reference point and, as a result: location on the catchment area, distance to sea, distance to source and watercourse) – Information on the transect by campaign (number and length, X, Y, LON coordinates, LAT of reference points "NGF" and end point "rive") – Information regarding the Vegetation Units (VU) identified by campaign (number, description: code, start position, end position, EUNIS3 characteristics, 4) – Origin of the data ("Observatoire Sélune," "Hors Observatoire Sélune," "Projet Séripage," or "Projet Restaure") – “Point” geometry (default) corresponding to the transect reference point – Line (alternative) geometry of the associated transect for each campaign.
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The study of riparian vegetation is based on the observation of natural plant communities spontaneously colonizing newly exposed areas following the erasure of the Vezins and La-Roche-Qui-Boit dams. The vegetation monitoring system includes two complementary approaches: i) a vegetation sampling method based on floristic surveys (composition & structure) carried out within a series of quadrats positioned along a transect ii) a monitoring of the vegetation units (UV) observed within the valley This dataset specifically concerns the overall characterization observed on each quadrat in terms of strata and concerns only the Sélune Observatory (2021-2026). The sampling monitoring system is based on measurements distributed at different points in space (longitudinally and laterally). It aims to identify the diversity of flora and vegetation and describe the structure of emerging formations and plant communities within the neo-valley. Implemented annually (sub-annual only for 2021, before dismantling), this monitoring aims to identify and characterize the evolution trajectories of these vegetation over time. The vegetation sampling protocol is implemented at several stations located along the course of the Sélune and at the mouth of several tributaries located in the right-of-way of the two former reservoirs. The sample of stations is supplemented by a batch of stations positioned outside the right-of-way of the two former reservoirs, downstream and upstream, which constitute so-called "reference" stations. For each station, a transect is established perpendicular to the channel, from the bank to a reference point located at the level of the former water reservoir (i.e. 60m NGF for Vezins & 28.5m NGF for LRQB). Along this transect, 25m2 (5mx5m) quadrats are positioned according to previously set distance intervals. These quadrats (named Q1 to Q1+n) constitute the elementary unit within which abiotic (slope, texture...) and biotic (composition, structure) parameters are characterized and evaluated. The number of quadrats sampled per station varies depending on the width of the exposed bank (or transect length). It is completed by a reference quadrat, located beyond this maximum value (named Q0). The inventory of vascular flora, i.e. herbaceous and woody plant species within the quadrats, aims to be exhaustive and to identify them up to the specific or even sub-specific rank. The characterization of cover by plant species on a quadrat allows to present, for each quadrat, all the species identified in the field (taxonomic determination and proportion (%) of cover on the quadrat and for the stratum considered). This layer gives, for each quadrat of each riparian vegetation monitoring station and each campaign of the Sélune Observatory from 2021 to 2026, the following information: – Quadrat information (id, code, number and distance from its centroid to the station reference point), – Campaign information (id, code, date, campaign), – Station information (code, name, protocol applied, number of quadrats, code for the associated Sélune reference point and, as a result, positioning on the catchment area, distance to sea, distance to source and watercourse, watercourse reference altitude) – Information on the transect by campaign (number and length, X, Y, LON, LAT coordinates of the reference points “NGF” and end point “bank”) – Information concerning the identified taxa: taxonomic determination, scientific name, and vernacular, identification stratum and overlap on this stratum – Information regarding the identification stratum: its wording "muscinal", "herbaceous", "young plant shrub", "low shrub", "high shrub" and "arborescent" as well as the height markers – “Point” geometry (default) corresponding to the transect reference point
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This repository contains raw data files (in .csv format) associated with a study investigating the role of composters in maintaining Drosophila suzukii populations. Nine experimental composters were monitored over two years using emergence traps and continuous temperature recording. A total of 95,322 Drosophilidae were captured from composters over the study period, of which 7,377 were D. suzukii. (2026-04-10)
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This dataset is linked to the manuscript “A recipe for a good π. How to properly estimate population genetics summary statistics and why we should systematically report them.” It gathers all data, metadata, and scripts necessary to generate the figures. To redo analyses and figures, one can download the whole directory and follow the README.md plus Jupyter notebooks detailing the whole pipeline (2026-01-23)
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The study of riparian vegetation is based on the observation of natural plant communities spontaneously colonizing newly exposed areas following the erasure of the Vezins and La-Roche-Qui-Boit dams. The vegetation monitoring system includes two complementary approaches: i) a vegetation sampling method based on floristic surveys (composition & structure) carried out within a series of quadrats positioned along a transect ii) a monitoring of the vegetation units (UV) observed within the valley This dataset specifically concerns the monitoring of the quadrats used in the vegetation sampling method, only for data from the Sélune Observatory (2021-2026) The sampling monitoring system is based on measurements distributed at different points in space (longitudinally and laterally). It aims to identify the diversity of flora and vegetation and describe the structure of emerging formations and plant communities within the neo-valley. Implemented annually (sub-annual only for 2021, before dismantling), this monitoring aims to identify and characterize the evolution trajectories of these vegetation over time. The vegetation sampling protocol is implemented at several stations located along the course of the Sélune and at the mouth of several tributaries located in the right-of-way of the two former reservoirs. The sample of stations is supplemented by a batch of stations positioned outside the right-of-way of the two former reservoirs, downstream and upstream, which constitute so-called "reference" stations. For each station, a transect is established perpendicular to the channel, from the bank to a reference point located at the level of the former water reservoir (i.e. 60m NGF for Vezins & 28.5m NGF for LRQB). Along this transect, 25m2 (5mx5m) quadrats are positioned according to previously set distance intervals. These quadrats (named Q1 to Q1+n) constitute the elementary unit within which abiotic (slope, texture...) and biotic (composition, structure) parameters are characterized and evaluated. The number of quadrats sampled per station varies depending on the width of the exposed bank (or transect length). It is completed by a reference quadrat, located beyond this maximum value (named Q0). The inventory of vascular flora, i.e. herbaceous and woody plant species within the quadrats, aims to be exhaustive and to identify them up to the specific or even sub-specific rank. This layer gives, for each monitoring quadrat of vegetation sampling from 2021 to 2026, the following information: – Quadrat information (id, code, specific number, distance to station reference point) – Campaign information (id, code, date, campaign), – Station information (code, name, protocol applied, number of quadrats, code for the associated Sélune reference point and, as a result: location on the catchment area, distance to sea, distance to source and watercourse) – Information on the transect by campaign (number and length, X, Y, LON coordinates, LAT of reference points "NGF" and end point "rive") – "Point" geometry corresponding to the reference point of the transect or station
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